Beyond Conventional Protein A: Mild Elution and Aggregate Control for Complex Antibody Purification

Abstract design of antibody with text about mild elution and aggregate control for antibody purification on teal background.

Bispecific antibodies and other complex biologics can present purification challenges that conventional Protein A processes were not designed to address. Their structural complexity may increase sensitivity to low-pH exposure and susceptibility to aggregation, fragmentation, and other product-related impurities. Meanwhile, conventional Protein A resins often provide limited separation between monomers and aggregates, increasing the burden on downstream polishing operations.

This joint whitepaper from Bestchrom Biosciences and Altruist Biologics evaluates two engineered Protein A resins, Novo-A Diamond and Extrem A Diamond, using an industrially relevant bispecific antibody. Their elution behavior, aggregate separation capability, operating flexibility, and manufacturing applicability were compared with those of a conventional Protein A resin.

Both engineered resins enabled substantially milder elution, with peak elution pH values of 5.00 for Novo-A Diamond and 4.87 for Extrem A Diamond, compared with 4.29 for the conventional resin. They also generated distinct aggregate-enriched tailing regions, creating clearer separation between monomer-rich and aggregate-rich fractions. Under the initial comparison conditions, aggregate reduction reached 66.93%, while monomer purity in the pooled eluate reached 95.53%.

Further optimization with 50 mM NaCl or CaCl₂ enhanced chromatographic resolution and broadened the operating window, supporting more flexible pool-cut strategies and more robust process development and scale-up. Both resins also demonstrated strong alkaline stability during repeated 0.5 M NaOH cleaning cycles, supporting their potential use in multi-cycle manufacturing.

Together, these findings show how next-generation Protein A platforms can move capture beyond recovery, combining mild-pH elution, early-stage aggregate control, and manufacturing-relevant robustness to improve product quality and reduce downstream purification burden for complex antibody processes.

Read the Whitepaper

Learn more about our findings on the BioProcess International website.